%! TEX root = main.tex
%<leader> rf is used to refresh folds
%\newif\ifonecolumn{}
\newif\ifdraft{}
\newif\ifpublishversion{}
\newif\ifthesis{}

%\onecolumntrue{}
%\onecolumnfalse{}

\draftfalse{}
\drafttrue{}

\publishversiontrue{}
%\publishversionfalse{}


\thesisfalse{}
%\thesistrue{}

\ifthesis{}
    \documentclass[chap]{thesis}
\else
    \documentclass[chap]{book}
    %\documentclass[10pt,twocolumn,letterpaper]{article}
    %\newcommand{\chapter}{\section}
    \newcounter{firstchapter}
    \setcounter{firstchapter}{0}
\fi

%\usepackage{extsizes}

\input{CrallPramb}
\input{CrallDef}

%\includeonly{chapter4-application}
%\includeonly{chapter5-systemchapter}
%\includeonly{chapter4-application,chapter5-systemchapter}

\ifpublishversion{}
    \newcommand{\devnewpage}{}
\else
    %\newcommand{\devnewpage}{\newpage}
    \newcommand{\devnewpage}{}
    % move all floats to the end of document
    % doesn't quite work
    %\extrafloats{1000}
    %\renewcommand\textfraction{1.0}  
    %\renewcommand\floatpagefraction{.9}
    %\usepackage{endfloat}
\fi


\begin{comment}
    rsync -arvhzP --include='figures*/***' --exclude='*' joncrall@hyrule.cs.rpi.edu:latex/crall-candidacy-2015/ ~/latex/crall-candidacy-2015
    %figures1 figures2 figures3 figures4 figures5 figuresX figuresC 
\end{comment}

%\author{Jon Crall}
\author{Jonathan P. Crall}

\ifthesis{}
    \input{thesis_preamb}
\fi


\begin{document}

\input{def}
\input{colordef}

\ifthesis{}
    %\input{header}
    %\maketitle
    \titlepagedraft{}
    \tableofcontents{}
    %\titlepage{}     
    %\copyrightpage{}         % optional           
    %\tableofcontents{}        
    \listoftables{}          % required if there are tables
    \listoffigures{}         % required if there are figures
    %\specialhead{ACKNOWLEDGMENT}
    %\lipsum[1]
    %\specialhead{ABSTRACT}
    %\lipsum[1]
\else
    \tableofcontents{}
    \listoffigures{}         % required if there are figures
\fi


\begin{comment}
./mass_tex_fixes.py --outline --showtype --sections=0:-6 --fpaths chapter4-application.tex
./mass_tex_fixes.py --outline --showtype --sections=0:-2 --fpaths chapter4-application.tex
./mass_tex_fixes.py --outline --showtype --fpaths chapter4-application.tex --nolabel
./mass_tex_fixes.py --outline --fpaths chapter4-application.tex --numlines=1
./mass_tex_fixes.py --outline --fpaths chapter4-application.tex --full=[chapter]
https://mail.google.com/mail/u/0/#inbox/152763bfd16e892a

./texfix.py --fpaths main.tex --outline --asmarkdown --numlines=999 -w --ignoreinputstartswith=def,Crall,header,colordef,figdef

./texfix.py --fpaths main.tex --reformat --fpaths=main.tex --print --nopygments
--numlines=999 --ignoreinputstartswith=def,Crall,header,colordef,figdef
\end{comment}

%\newcommand{\fnote}[1]{\footnote{#1}}
\newcommand{\fnote}[1]{ (#1)}
\ifpublishversion{}
    \newcommand{\devcomment}[1]{}
    \newcommand{\chuckcomment}[1]{}
    \newcommand{\caplbl}[1]{}
\else
    %\newcommand{\caplbl}[1]{}
    \newcommand{\caplbl}[1]{\red(#1)\black\xspace}
    \newcommand{\devcomment}[1]{\marginpar{\scriptsize{\darkgreen{}\textbf{#1}\black{}}}}
    \newcommand{\chuckcomment}[1]{\marginpar{\scriptsize{\chuckblue{}\textbf{#1}\black{}}}}
\fi

\input{figdef1}
%\input{figdef2}
%\input{figdef3}
%\input{figdef4}
%\input{figdef5}
%\input{figdefexpt.tex}
%\input{figdefindiv.tex}
%\input{figdefdbinfo.tex}

\include{chapter1-intro}
%\include{chapter2-related-work}
%\include{chapter3-matching}

%\setcounter{chapter}{3}
%\include{chapter4-application}

%\setcounter{chapter}{4}
%\include{chapter5-systemchapter}
%\include{chapter6-conclusion}

%\bibliographystyle{plain}
\bibliographystyle{ieee}
\bibliography{My_Library_clean}


\end{document}
% chktex-file 17