The system studied has been in operation since 2006, and supplies the Federal University of Pernambuco—UFPE, University Campus of Recife, near to the NIATE—Exact Sciences and Nature Centre/Science Computing Centre. It consists of a raw water gathering box, tray aerators, decanter, three filters, pump house, chlorination system, the decanter sludge drying gantry and a laboratory for water quality monitoring. This system treats groundwater at 72.3 m³·water/h flow rate from 3 wells near to the Technological and Geosciences Centre (CTG): CTG 1 with 34.1 m³·water/h, CTG 2 with 23.9 m³·water/h and, CTG 3 with 19.8 m³·water/h low rates. Another independent well in the Campus is responsible to supply the university hospital (UH) with a flow rate of 12 m³·water/h.

In the UFPE system, water of the CTG wells is pumped to a raw water gathering box, and percolates through aerators to oxidize soluble metals such as iron and manganese. From the aerators, water moves by gravity to sedimentation tanks, where flocs formed by aeration can settle. Decanted water is collected in gutters and flows to upstream filters. After filtration, the water flows into the tank of the treatment plant. In the output of this, chlorination is applied, and the water is piped to an elevated reservoir from which it is distributed to other reservoirs at the university centers. When necessary, water receives pre-chlorination before it enters into the sedimentation tank. In the university hospital, before being stored in the reservoir, the well water passes through a treatment system, which is operated and managed separately by the hospital administration, and consists of a tray aerator and an activated carbon filter.

Because of high demand and the need for a continuous supply of water, the university hospital also uses water from the public water distribution system. In some extreme, scarce water situations at the university restaurant, water vender companies supply the system using a truck tanker.

Four reservoirs sites in the Federal University of Pernambuco Campus of Recife, were studied: a treatment plant (TP), a university restaurant (UR), the physical education center (PEC) and the university hospital (UH).

Water was collected in two different periods, from September 2013 to March 2014 and from January to July 2015, on a bimonthly basis, from four reservoir sites. Sterilized 1 L plastic bottles were used to collect the water according to the standard methods in [33]. Samples were transported and kept refrigerated until analysis in triplicate for physical, chemical and mycological characteristics.

The parameters residual free chlorine, temperature, pH, conductivity, turbidity, dissolved oxygen, and total organic carbon (TOC) were analyzed. The free residual chlorine was measured at the time of collection by visual comparison using a PD kit Hach model CN-70 (Hach Company Loveland, CO, USA), according to the manufacturer’s instruction. Temperature, pH, conductivity, turbidity, and dissolved oxygen, were determined at the time of collecting by a water quality multiparameter meter HORIBA U50 model (HORIBA Ltd, Miyanohigashi, Kisshoin Minami-ku, Kyoto, Japan). Aliquots from each sample were collected for TOC analysis at the Environmental Sanitation Laboratory of Technology and Geosciences Centre—UFPE. The 680 °C combustion catalytic oxidation method of the TOC-Vcsh analyzer (Shimadzu Corporation, Tokyo, Japan) was used.

The water samples from TP were obtained before chlorination because the final chlorination is added to the reservoir outlet at the concentration of 2 mg/L. The PEC reservoir presented no residual chlorine (Table 1). Various factors could have contributed to this result: ineffective disinfection including the effect of particulate matter on the residual disinfectant. In fact, this sampling site presented the highest values of turbidity, ranging from 7.9 to 16.5 TU (turbidity units), contributing to disinfectant depletion. The UR and UH use a supplementary manual addition of chlorine in the reservoirs, however this is discontinuous and could not maintain the constant level of residual disinfectant. For this, when the pumps are not working properly or some failure occurs in the system, the procedure is to pour directly into the water chlorine solution. For UR, sodium dichloro isocynurate tablets are also used to keep the residual chlorine concentration between 0.2–2.0 mg/L. Values of residual chlorine ranged from 0.2 to 0.5 mg/L and are, in general, considered satisfactory for water disinfection of free-living microorganisms [29], however, in the present study, no chlorine was obtained in 22 out 24 samples for UR, PEC and UH.

The water temperatures ranged from 26.4 to 28.0 °C, with higher values in January 2014. The average value over the sampling period was 26.9 °C.

The pH varied between 4.1 and 7.3 with a mean of 6.0. The highest occurred in the PEC reservoir in September 2013. These pHs were within the range favorable to the growth of fungi.

The water turbidity in all reservoirs varied between 5.2 and 16.5 TU. In the TP reservoir, values ranged from 5.7 to 13 TU and are much higher than the water potability standard for post filtration groundwater or pre-disinfection of 1.0 UT [37]. In the other sample sites, turbidity levels exceeded the maximum value of 5.0 UT at all points of the distribution network established by the water potability Brazilian standard [37]. The presence of suspended material and chlorine-demanding solutes in water reduce the ability of disinfection to inactivate microorganisms [29].

The conductivity of water values varies between 0.26 and 0.42 mS/cm (Table 1). The highest value occurred in the ETA tank in September 2013.

The dissolved oxygen content in samples ranged between 5.38 and 18.23 mg/L with a mean of 11.7 mg/L. These results show that the dissolved oxygen availability is not a limiting factor to the presence of aerobic microorganism, such as fungi, in the system and its concentration could be related to the water aeration performance on the tray aerators.

The TOC concentrations varied from 2.8 to 4.2 mgC/L, with an average of 3.37 mgC/L. The contents were slightly higher in March 2013. TOC is used to characterize the dissolved organic matter suspended in natural water, and the normal value of groundwater range 0.1–4 mgC/L [38]. The results show that the system provides water with normal organic carbon concentrations and imply that these are sufficient for fungal growth, especially for the oligotrophic species.

Overall, the range of the water physical-chemical parameters found can support a wide fungal diversity.

All sampling sites were positive for filamentous fungi. In total, 1712 CFU were counted. Fungal counts ranged from 5 to 207 CFU/100 mL, with an average of 53 CFU/100 mL per sampling site (Figure 1). The highest counts occurred in the UR reservoir (15 May/2015) of 207 CFU/100 mL, followed by PEC (Nov/2013) with 173 CFU/100 mL. The lowest values occurred in the TP reservoir (Mar/2015) of 5 CFU/100 mL.

Taking the Swedish legislation of 100 CFU/100mL for fungi in water as reference, 22% of the samples exceeded this limit. The UR sampling site had 207, 120 and 113 CFU/100 mL. The TP site exceeded twice with 170 and 133 CFU/100 mL. The PEC and UH exceeded once with each presenting 173 and 142 UFC/100 mL, respectively.

Filamentous fungi in drinking water are common in water distribution systems and can occasionally be isolated in high concentrations [10]. In Poland, the samples count ranged from 20 to 500 CFU/100 mL [17] and in Australia counts were 33 and 97 CFU/100 mL for the water from mains and reservoirs, respectively [22]. In Egypt, Samah et al. [39] analyzed ground water for filamentous fungi and found 4 to 119 CFU/100 mL, while in untreated ground water, an average of 66 CFU/100 mL were found [11]. Hence, many of the present values for Brazil are very high and may represent a health risk to consumers.

Evidence suggests that fungi survive and multiply in distribution systems in biofilms and sediments, particularly at warmer temperatures, or where the flow is restricted [16]. An important aspect in the current work is that the water is stored. Reservoirs have features such as darkness, long retention times and stagnation zones that favor the proliferation of microorganisms and biofilm formation. Biofilms protect microorganisms from disinfection and can be responsible for transferring fungi (and other microorganisms) to the bulk of the water [13,40]. The physical-chemical water quality such as temperatures, turbidity and availability of TOC may encourage fungal growth. In addition, disinfection was demonstrated as deficient or missing in the present system.

The UH site, except samples taken on May 2015, presented the lowest numbers with a maximum of 46 and minimum of 7 CFU/100 mL. These results could be attributed to a more systematic application of chlorine, in addition to more intense surveillance and preventative actions contributing to fewer fungi.

Among 859 strains identified, the most abundant genera were Aspergillus (37%), Penicillium (25%), Trichoderma and Fusarium (9% each), and Curvularia (5%). Acremonium, Cladosporium, Cunninghamella, Humicola and Leptodontium were 1% while the remainder was less than 1%.

The fungi that were identified to species are showed in Table 2. These included Aspergillus alliaceus, A. chevalieri, Aspergillus flavus, A. parasiticus, A. fumigatus, A. neoniveus, A. niger complex (which can also include A. amawori and A. tubingensis), A. terreus and A. versicolor; Penicillium citrinum, P. janczewskii, P. oxalicum and P. waksmanii; Fusarium solani; Trichoderma harzianum and T. viride; Curvularia pallescen; and Pestalotiopsis karstenii which had a high frequency of 2%. Detected in small numbers were: Cladosporium cladosporioides, Lichtheimia hyalospora, Paecilomyces variotii, Ramichloridium matsushimae, Scolecobasidium humicola, and Talaromyces purpurogenus.

Aspergillus, Penicillium, Fusarium, Trichoderma, Curvularia and Pestalotiopsis were detected in all sampling sites. Among the Aspergillus species, A. flavus had the highest frequency, followed by A. niger complex, A. parasiticus and A. versicolor. Penicillium citrinum was the most abundant species within the penicillia. The species A. flavus, P. citrinum followed by A. niger complex had the highest frequency (respectively, 7.3%, 6.8% and 5.5%) in the sampling site TP, which can be attributed to the lack of chlorination. For PEC, where the chlorination was poor, A. flavus remained abundant (3.4%). In addition, P. citrinum shows resilience to the chlorination effect in the sampling sites UR (5.7%) and UH (5.2%) when compared with TP (6.8%). In contrast, the PEC sampling site shows no residual chlorine and the highest turbidity which is favourable to the fungi, but only 2.7% P. citrinum was obtained which means other external factors may be detrimental for this species.

The incidence of nosocomial fungal infections has dramatically increased in recent decades. Aspergillus is the second most frequent cause of nosocomial fungal infections, and aspergillosis tends to occur in immunocompromised patients [28,41]. Anaissie et al. [42] recovered Aspergillus species from a hospital water system and demonstrated the highest airborne Aspergillus propagule density (2.95 CFU/m³) in water used in bathrooms. In addition, they reported that water from tanks yielded higher colony-forming units than municipal water. Furthermore, many areas of the world demonstrate a wide distribution of fungi in water supplies [28]. About 4.8 million adult people worldwide who have asthma also have allergic bronchopulmonary aspergillosis. Of these 400,000 are estimated also have chronic pulmonary aspergillosis [43,44].

The present results show A. fumigatus appeared in three important sampling sites: TP, UR and UH. This fungus is a highly significant pathogen causing fungal infection in immunocompromised patients [28,45]. However, A. fumigatus was recovered from 49% of taps at Rikshospitalet University Hospital, Oslo [27] and a high occurrence of this species was found in domestic wells in Brazil [28]. Among invasive fungal infections, A. fumigatus accounts for 90% of cases and, Fusarium and zygomycetes are common problems amongst the remainder [6,31].

In this current work, all sampling sites presented A. flavus and A. parasiticus and these species are recognized producers of aflatoxins. Paterson et al. [46] demonstrated production of aflatoxins in a cold water storage tank. Water subjected to storage (e.g., reservoirs, cisterns and bottles) for long periods, may contain increased mycotoxin concentrations. The long term, daily consumption of large amounts of water containing low levels of mycotoxin, requires further consideration as a health hazard [10,15,30].

Interestingly, P. citrinum also occurred in all samples sites. This species produces the mycotoxin citrinin and is also implicated as a cause of mycoses [47]. The other penicillia in Table 2 have not yet been implicated in human mycoses. Ma et al. [48] analyzed a hospital hot water system for potentially pathogenic fungi using ITS sequencing and penicillia were the most abundant. In general, these fungi are minor contributors to human diseases, apart from Talaromyces marneffei which causes a lethal systemic infection (penicilliosis) [47]. Accordingly, it is very important to identify penicillia to the species level.

Fusarium and Trichoderma shared the same relative frequency in all samples. Fusarium can cause several opportunistic mycoses, such as subcutaneous infections and invasive mycoses in immunocompromised [49]. F. solani was isolated frequently from the sampling sites (Table 2) and is associated with the production of the water soluble T-2 toxin [50]. The F. oxysporum species and F. solani species complexes are responsible for 80% of human Fusarium infection [51]. They are able to form biofilms on contact lens and polyvinyl chloride pipes [52]. Related keratitis outbreaks associated with contact lens use were caused by Fusarium spp. in Southeast Asia and North America [53]. Water in plumbing systems was suggested as the main environmental reservoir for fusaria eye infections [54].

Trichoderma have been mentioned as emergent pathogens in association to risk factors such as peritoneal dialysis, organ transplantation, and hematologic disorder. Some species of this genera, such as Trichoderma longibrachiatum, which is mentioned as the main human pathogen of the genus, and T. atroviride, T. citrinoviride, T. harzianum, T. koningii, T. orientale, T. pseudokoningii, T. reesei, and T. viride are associated with infections, allergic sinusitis, keratitis, otitis, superficial and subcutaneous infection, peritonitis, endocarditis, brain abscess and deep pulmonary infection [55,56].

Ramichloridium matsushimae was found at a low percentage. This is a black yeast, a term used to describe melanised fungi that display a yeast state especially in culture. This fungus is an opportunistic human pathogen [57].

Finally, the R2A and Sabouraud media were not selective in separating clearly fungal taxa. This could be explained by the fungi not being under stress conditions due to the low or zero residual chlorine and the presence of considerable amounts of dissolved oxygen and organic matter in water samples. Furthermore, Sabouraud, as a richer medium, gave better conditions for the water fungi (conidia and propagules) to grow, which is reflected by the higher CFU obtained, of 15%–30% more when compared to R2A medium.