{
  "abstract": "Camino is an open-source, object-oriented software package for processing diffusion MRI data. Camino implements a data processing pipeline, which allows for easy scripting and flexible integration with other software. This paper summarises the features of Camino at each stage of the pipeline from the raw data to the statistics used by clinicians and researchers. The paper also discusses the role of Camino in the paper \"An Automated Approach to Connectivity-based Partitioning of Brain Structures\", published at MICCAI 2005.",
  "authors": [
    {
      "author_fullname": "Cook, Philip A",
      "author_place": 1,
      "persona_email": "p.cook@cs.ucl.ac.uk",
      "persona_firstname": "Philip",
      "persona_id": 34,
      "persona_lastname": "Cook"
    },
    {
      "author_fullname": "Bai, Yu",
      "author_place": 2,
      "persona_id": null
    },
    {
      "author_fullname": "Hall, Matt G",
      "author_place": 3,
      "persona_id": null
    },
    {
      "author_fullname": "Nedjati-Gilani, Shahrum",
      "author_place": 4,
      "persona_id": null
    },
    {
      "author_fullname": "Seunarine, Kiran K",
      "author_place": 5,
      "persona_id": null
    },
    {
      "author_fullname": "Alexander, Daniel C",
      "author_place": 6,
      "persona_id": null
    }
  ],
  "categories": [],
  "comments": [],
  "date_submitted": "2005-08-05T18:32:32Z",
  "journals": [
    {
      "journal_id": 3,
      "journal_name": "The Insight Journal"
    }
  ],
  "license": "You are licensing your work to Kitware Inc. under the\nCreative Commons Attribution License Version 3.0.\n\nKitware Inc. agrees to the following:\n\nKitware is free\n * to copy, distribute, display, and perform the work\n * to make derivative works\n * to make commercial use of the work\n\nUnder the following conditions:\n\\\"by Attribution\\\" - Kitware must attribute the work in the manner specified by the author or licensor.\n\n * For any reuse or distribution, they must make clear to others the license terms of this work.\n * Any of these conditions can be waived if they get permission from the copyright holder.\n\nYour fair use and other rights are in no way affected by the above.\n\nThis is a human-readable summary of the Legal Code (the full license) available at\nhttp://creativecommons.org/licenses/by/3.0/legalcode",
  "publication_id": 31,
  "reviews": [],
  "revisions": [
    {
      "article": "bafkreie6pj4may3l7czj3peeityxij6kbwixb2n7bfjooxf7dtej6dxjhq",
      "citation_list": [
        {
          "doi": "10.1007/3-540-31272-2_5",
          "key": "ref1",
          "score": 85.86863,
          "unstructured": "An introduction to computational diffusion MRI: the diuffsion tensor and beyond+: Visualization and Image Processing of Tensor Fields+2005+D.C. Alexander+Hagen"
        },
        {
          "doi": "10.1016/s0006-3495(94)80775-1",
          "key": "ref2",
          "score": 75.90202,
          "unstructured": "MR diuffsion tensor specstroscopy and imaging+Biophys J+66+1994+259+267+P.J. Basser+J. Mattiello+D.L. Bihan"
        },
        {
          "doi": "10.1007/11566465_21",
          "key": "ref3",
          "score": 99.141975,
          "unstructured": "An automated approach to connectivity-based partitioning of brain structures+In: Proc. MICCAI+2005+P. Cook+B. Avants+P. Yushkevich+D. Alexander+J. Gee+O. Ciccarelli+A. Thompson"
        },
        {
          "doi": "10.1038/nn1075",
          "key": "ref4",
          "score": 157.49707,
          "unstructured": "Non-invasive mapping of connections between human thalamus and cortex using diffusion imaging+Nat. Neurosci+6+2003+750+757+T.E. Behrens+H. Johansen-Berg+M.W. Woolrich+S.M. Smith+C.A. WheelerKingshott+P.A. Boulby+G.J. Barker+E.L. Sillery+K. Sheehan+O. Ciccarelli+A.J. Thompson+J.M. Brady+P.M. Matthews"
        },
        {
          "doi": "10.1002/mrm.20283",
          "key": "ref5",
          "score": 127.52031,
          "unstructured": "squashing peanuts and smashing pumpkins: How noise distorts diuffsion-weighted MR data+MRM+52+2004+973+993+D.K. Jones+P.J.: Basser"
        },
        {
          "doi": "10.1002/mrm.20426",
          "key": "ref6",
          "score": 90.67038,
          "unstructured": "6+Restore: Robust estimation of tensors by outlier rejection+MRM+52+2005+1088+1095+L.C. Chang+D.K. Jones+C. Pierpaoli"
        },
        {
          "doi": "10.1002/mrm.10209",
          "key": "ref7",
          "score": 91.83846,
          "unstructured": "Detection and modeling of nongaussian apparent diuffsion coefficient profiles in human brain data+MRM+48+2002+331+340+D.C. Alexander+G.J. Barker+S.R. Arridge"
        },
        {
          "doi": "10.1088/0266-5611/19/5/303",
          "key": "ref8",
          "score": 122.357056,
          "unstructured": "Persistent angular structure: new insights from diffusion magnetic resonance imaging data+Inverse Problems+19+2003+1031+1046+K.M. Jansons+D.C. Alexander"
        },
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          "doi": "10.1016/j.neuroimage.2004.07.037",
          "key": "ref9",
          "score": 159.78763,
          "unstructured": "Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution+NeuroImage+23+2004+1176+1185+J. Tournier+F. Calamante+D.G. Gadian+A. Connelly"
        },
        {
          "doi": "10.1002/mrm.20279",
          "key": "ref10",
          "score": 75.37742,
          "unstructured": "Q-ball imaging+Magnetic Resonance in Medicine+52+2004+1358+1372+D.S.: Tuch"
        },
        {
          "doi": "10.1006/jmrb.1996.0086",
          "key": "ref11",
          "score": 102.79054,
          "unstructured": "Microstructural and physiological features of tissues elucidated by quantitative-diffusion-tensor MRI+JMR B111+1996+209+219+P.J. Basser+C. Pierpaoli"
        },
        {
          "doi": "10.1098/rstb.2005.1639",
          "key": "ref12",
          "score": 93.50119,
          "unstructured": "Probabilistic anatomical connectivity using persistent angular structure obtained from diffusion weighted imaging+Phil. Trans. Roy. Soc. Series B+360+2005+893+902+G.J.M. Parker+D.C. Alexander"
        },
        {
          "doi": "10.1002/1522-2594(200007)44:1<41::aid-mrm8>3.0.co;2-o",
          "key": "ref13",
          "score": 121.74418,
          "unstructured": "Statistical artifacts in diffusion tensor MRI (DT-MRI) caused by background noise+MRM+44+2000+41+50+P.J. Basser+S. Pajevic"
        },
        {
          "doi": "10.1002/jmri.10350",
          "key": "ref14",
          "score": 115.83456,
          "unstructured": "A framework for a streamline-based probabilistic index of connectivity (PICo) using a structural interpretation of MRI diuffsion measurements+JMRI+18+2003+242+254+G.J.M. Parker+C.A.M. Wheeler-Kingshott+H.A. Haroon"
        },
        {
          "doi": "10.1016/j.media.2005.03.005",
          "key": "ref15",
          "score": 100.126305,
          "unstructured": "Lagrangian frame dieffomorphic image registration: Morphometric comparison of human and chimpanzee cortex+MIA+B.A. Avants+P.T. Schoenemann+J.C. Gee"
        },
        {
          "key": "ref16",
          "score": 40.332657,
          "unstructured": "Regional structural characterization of the brain of schizophrenia patients+1926+P.A. Yushkevich+J. Piven+H. Cody+S. Ho+Gerig"
        }
      ],
      "dapp": null,
      "dataset": null,
      "doi": "10.54294/fgfrtv",
      "handle": "1926/38",
      "source_code": null,
      "source_code_git_ref": null
    }
  ],
  "source_code_git_repo": null,
  "submitted_by_author": {
    "author_email": "p.cook@cs.ucl.ac.uk",
    "author_firstname": "Philip",
    "author_fullname": "Cook, Philip",
    "author_id": 34,
    "author_institution": "University College London",
    "author_lastname": "Cook"
  },
  "tags": [
    "Diffusion",
    "MRI",
    "simulation"
  ],
  "title": "Camino: Diffusion MRI reconstruction and processing"
}